Bioconductor RNA seq

Showing : RNA seq • reset

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2.6k

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deseq2 mahattan plot RNA Seq

updated 3.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by adeler001 • 0

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3.3k

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batch effect limma rna seq DE

updated 4.1 years ago by Steve Lianoglou ★ 13k • written 4.1 years ago by svlachavas ▴ 830

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663

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RNA seq cpm

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by isabel.pieterse • 0

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901

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 220 • written 4.5 years ago by 116100016 • 0

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907

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edger RNA Seq

updated 4.5 years ago by James W. MacDonald 66k • written 4.5 years ago by abf ▴ 30

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502

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rna seq

4.5 years ago adeler001 • 0

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791

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 220 • written 4.6 years ago by 116100016 • 0

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558

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deseq2 likelihood ratio rna seq wald test

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by adeler001 • 0

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957

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volcano plot rna seq

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by adeler001 • 0

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1.3k

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limma voom RNA Seq Time-course experiments

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by mahes.muniandy • 0

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984

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RNA seq wgcna

updated 5.0 years ago by Peter Langfelder ★ 3.0k • written 5.0 years ago by agustin.gonvi ▴ 20

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.1 years ago Mozart ▴ 30

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.3 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10